Integrative clustering of multiple genomic data types

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Documentation for package ‘iCluster’ version 2.1.0

• DESCRIPTION file.
• Code demos. Use demo() to run them.

Help Pages

breast.chr17	Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17
compute.pod	A function to compute the proportion of deviation from perfect block diagonal matrix
coord	genomic coordinates
gbm	GBM data
glp	good lattice points using the uniform design
iCluster	Integrative clustering of multiple genomic data types
iCluster2	A variant of the iCluster method with variance weighted shrinkage
plotHeatmap	A function to generate heatmap panels sorted by integrated cluster assignment.
plotiCluster	A function to generate cluster separability matrix plot.
plotRI	A function to generate reproducibility index plot.
simu.datasets	simulated dataset.
tune.iCluster2	Model tuning function